DATE: 27th - 29th June
VENUE: Resort centre „Dubingiai“, Moletai, Lithuania
SCHEDULE
Arrive: 26th June
Conclude: 29th June
ORGANIZERS
The University of Nottingham
COST Action IC0604
PROGRAM: BEGINNER’S COURSE
| 27th June: Introduction to ImageJ | |
| 09:00 – 09:30 | Introduction – the role of image analysis in Pathology Mohammad Ilyas |
| 09:30 – 10:15 | Basic use of imageJ and loading ImageJ onto laptops Vincenzo Della Mea |
| 10:15 – 10:45 | Tea / Coffee |
| 10:45 – 11:30 | Worked examples with ImageJ Vincenzo Della Mea |
| 11:30 – 12:30 | Practical session of easy image analysis problems Vincenzo Della Mea |
| 12:30 – 15:00 | Lunch and relaxation |
| 15:00 – 15:45 | Image segmentation Guoping Qiu |
| 15:45 – 17:00 | Practical session: counting and analysing renal glomeruli Vincenzo Della Mea / TissueGnostics |
| 17:00 – 17:30 | Tea / Coffee |
| 17:30 – 18:30 | Practical session: counting and analysing renal glomeruli Vincenzo Della Mea / TissueGnostics |
| 28th June: Immunohistochemistry | |
| 09:00 – 09:45 | The challenges to evaluating immunostaining Elton Rexhepaj |
| 09:45 – 10:30 | Practical session: evaluating cytoplasmic and membranous staining Elton Rexhepaj |
| 10:30 – 11:00 | Tea / Coffee |
| 11:00 – 12:30 | Practical session: evaluating cytoplasmic and membranous staining Elton Rexhepaj |
| 12:30 – 15:00 | Lunch and relaxation |
|
15:00 – 15:45 |
Quantification of immunostaining by image analysis TissueGnostics |
|
15:45 – 17:00 |
Practical session: evaluating nuclear staining TissueGnostics |
| 17:00 – 17:30 | Tea / Coffee |
| 17:30 – 18:30 | Practical session: evaluating nuclear staining TissueGnostics |
| 29th June: Stereology | |
|
09:00 – 09:45 |
Stereology for tumour analysis Paulette Herlin |
| 09:45 – 10:30 | Practical session: quantification of numerical density Paulette Herlin and Nicolas Elie |
| 10:30 – 11:00 | Tea / Coffee |
| 11:00 – 12:30 | Practical session: quantification of volume fraction Paulette Herlin and Nicolas Elie |
| 12:30 – 15:00 | Lunch and relaxation |
| 15:00 – 16:30 | Practical session: evaluating fibrosis Trevor Gray |
| 16:30 – 17:00 | Tea / Coffee |
PROGRAM: ADVANCED COURSE
15:00 – 17:00 09:00 – 10:30
27th June
09:00 – 10:30
Introduction to digital imaging
Branimir Reljin
10:30 – 11:00
Tea / Coffee
11:00 - 11.45
Methods of image capture and viewing
Ireni Reljin
11:45 – 12:30
Storage and manipulation of image data
Vytenis Punys
12:30 – 15:00
Lunch and relaxation
15:00 – 16:00
Advanced feature extraction
Phillipe Belhomme
16:00 – 17:00
Practical session: Discriminating tumour from normal
Phillipe Belhomme
17:00 – 17:30
Tea / Coffee
17:30 – 18:00
Practical session: Discriminating tumour from normal
Phillipe Belhomme
28th June
09:00 – 09:45
Multispectral imaging in Pathology
Paulette Herlin / Philippe Belhomme
09:45 – 10:30
Analysing large data sets
Qiu Guoping
10:30 – 11:00
Tea / Coffee
11:00 – 11:45
Grid computing in image analysis
Klaus Kayser
11:45 – 12:30
Integrating Pathology data with other clinical data
Vytenis Punys
12:30 – 15:00
Lunch and relaxation
Practical session: Integrating Matlab and ImageJ
Elton Rexhepaj
17:00 – 17:30
Tea / Coffee
17:30 – 18:30
Practical session: Integrating Matlab and ImageJ
Elton Rexhepaj
29th June
Practical session: 3D reconstruction in pathology
Alain Pitiot
10:30 – 11:00
Tea / Coffee
11:00 – 12:30
Practical session: 3D reconstruction in pathology
Alain Pitiot
12:30 – 15:00
Lunch and relaxation
15:00 – 16:30
Workshop: Using Slidepath for managing TMAs and immunohistochemistry
Mohammad Ilyas / Peter Riegman
16:30 – 17:00
Tea / Coffee
